qs2 - Efficient Serialization of R Objects

Streamlines and accelerates the process of saving and loading R objects, improving speed and compression compared to other methods. The package provides two compression formats: the 'qs2' format, which uses R serialization via the C API while optimizing compression and disk I/O, and the 'qdata' format, featuring custom serialization for slightly faster performance and better compression. Additionally, the 'qs2' format can be directly converted to the standard 'RDS' format, ensuring long-term compatibility with future versions of R.

Last updated

compressiondata-storageserializationcpp

12.55 score 88 stars 123 dependents 614 scripts 30k downloads

stringfish - Alt String Implementation

Provides an extendable, performant and multithreaded 'alt-string' implementation backed by 'C++' vectors and strings.

Last updated

pcre2cpp

11.21 score 70 stars 129 dependents 21 scripts 36k downloads

seqtrie - Radix Tree and Trie-Based String Distances

A collection of Radix Tree and Trie algorithms for finding similar sequences and calculating sequence distances (Levenshtein and other distance metrics). This work was inspired by a trie implementation in Python: "Fast and Easy Levenshtein distance using a Trie." Hanov (2011) <https://stevehanov.ca/blog/index.php?id=114>. It also includes a modified version of the Starcode all-pairs search algorithm (Zorita, Cuscó, and Filion 2015) <doi:10.1093/bioinformatics/btv053>.

Last updated

cpp

5.78 score 8 stars 15 scripts 174 downloads

glow - Make Plots that Glow

Provides a framework for creating plots with glowing points.

Last updated

cpp

5.02 score 19 stars 11 scripts 238 downloads

fraq - A High-Throughput and Extensible Toolkit for Processing FASTQ Data

High-throughput extensible toolkit for processing FASTQ data. The goal of this package is to empower users to quickly build out small programmatic 'kernels' to define any FASTQ processing task they may need. Builds on Intel TBB’s flow graph to orchestrate concurrent I/O and data processing; throughput can be as fast as compression and disk speed allows. The package also ships with a suite of predefined kernels for common FASTQ tasks.

Last updated

softwareinfrastructuresequencingdnaseqqualitycontrolalignmentcpp

4.30 score 1 stars 9 scripts 120 downloads